Package: mads
Depends: R (>= 3.5.0), mrds, stats
Suggests: testthat
Type: Package
Title: Multi-Analysis Distance Sampling
Version: 0.1.6
Author: Laura Marshall
Maintainer: Laura Marshall <lhm@st-and.ac.uk>
Description: Performs distance sampling analyses on a number of species
        at once and can account for unidentified sightings, model
        uncertainty and covariate uncertainty. Unidentified sightings
        refer to sightings which cannot be allocated to a single
        species but may instead be allocated to a group of species. The
        abundance of each unidentified group is estimated and then
        prorated to the species estimates. Model uncertainty should be
        incorporated when multiple models give equally good fit to the
        data but lead to large differences in estimated density /
        abundance. Covariate uncertainty should be incorporated when
        covariates cannot be measured accurately, for example this is
        often the case for group size in marine mammal surveys.
        Variance estimation for these methods is via a non parametric
        bootstrap. The methods implemented are described in Gerodette
        T. and Forcada J. (2005) <10.3354/meps291001> Non-recovery of
        two spotted and spinner dolphin populations in the eastern
        tropical Pacific Ocean.
BugReports: https://github.com/DistanceDevelopment/mads/issues
License: GPL (>=2)
Collate: 'accumulate.results.R' 'calculate.dht.R'
        'check.bootstrap.options.r' 'check.convergence.R'
        'check.fitted.R' 'check.covar.uncertainty.R'
        'check.ddf.models.R' 'check.species.code.definitions.R'
        'check.species.presence.r' 'create.obs.table.R'
        'create.param.arrays.r' 'create.result.arrays.R'
        'execute.multi.analysis.R' 'fit.ddf.models.R'
        'format.dht.results.R' 'get.datasets.R' 'glossary.R'
        'mae.warning.R' 'model.description.R' 'object.description.R'
        'process.bootstrap.results.R' 'process.warnings.R'
        'prorate.unidentified.R' 'renumber.duplicates.R'
        'resample.covariates.R' 'resample.data.R' 'rtpois.R'
        'store.param.ests.R' 'summary.ma.allspecies.R'
        'summary.ma.allunid.R' 'summary.ma.analysis.R' 'summary.ma.R'
        'summary.ma.species.R' 'summary.ma.unid.R' 'mads-package.R'
RoxygenNote: 7.1.0
Encoding: UTF-8
Config/pak/sysreqs: cmake
Repository: https://distancedevelopment.r-universe.dev
Date/Publication: 2023-11-23 21:35:38 UTC
RemoteUrl: https://github.com/distanceDevelopment/mads
RemoteRef: HEAD
RemoteSha: d3f9e9979e3c47c19d1c0550a8cd3b4632def9e1
RemoteSubdir: mads
NeedsCompilation: no
Packaged: 2026-07-03 21:45:11 UTC; root